Xyce
6.1
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#include <N_DEV_Neuron6.h>
Public Member Functions | |
Instance (const Configuration &configuration, const InstanceBlock &IB, Model &Miter, const FactoryBlock &factory_block) | |
~Instance () | |
void | registerLIDs (const std::vector< int > &intLIDVecRef, const std::vector< int > &extLIDVecRef) |
void | registerStateLIDs (const std::vector< int > &staLIDVecRef) |
void | loadNodeSymbols (Util::SymbolTable &symbol_table) const |
Populates and returns the store name map. More... | |
const std::vector< std::vector< int > > & | jacobianStamp () const |
void | registerJacLIDs (const std::vector< std::vector< int > > &jacLIDVec) |
bool | processParams () |
bool | updateTemperature (const double &temp_tmp) |
bool | updateIntermediateVars () |
bool | updatePrimaryState () |
bool | updateSecondaryState () |
bool | setIC () |
void | varTypes (std::vector< char > &varTypeVec) |
bool | loadDAEQVector () |
bool | loadDAEFVector () |
void | auxDAECalculations () |
bool | loadDAEdQdx () |
bool | loadDAEdFdx () |
Model & | getModel () |
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DeviceInstance (const InstanceBlock &instance_block, ParametricData< void > ¶metric_data, const FactoryBlock &factory_block) | |
virtual | ~DeviceInstance () |
virtual bool | isLinearDevice () const |
virtual std::ostream & | printName (std::ostream &os) const |
virtual void | enableLeadCurrentCalc () |
virtual void | registerGIDs (const IndexPairVector &intGIDListRef, const IndexPairVector &extGIDListRef) |
virtual void | registerStateGIDs (const IndexPairVector &staGIDListRef) |
virtual void | registerStoreGIDs (const IndexPairVector &stoGIDListRef) |
virtual void | registerStoreLIDs (const LocalIdVector &stoLIDVecRef) |
virtual void | registerBranchDataLIDs (const LocalIdVector &branchDataLIDVecRef) |
virtual const std::vector< std::string > & | getDepSolnVars () |
virtual void | registerDepSolnGIDs (const std::vector< IdVector > &varList) |
virtual const std::vector< std::string > & | getDepStateVars () |
virtual void | registerDepStateGIDs (const std::vector< IdVector > &varList) |
virtual const std::vector< std::string > & | getDepStoreVars () |
virtual void | registerDepStoreGIDs (const std::vector< IdVector > &varList) |
virtual const std::vector< std::string > & | getDepLeadCurrentVars () |
virtual void | registerDepLeadCurrentGIDs (const std::vector< IdVector > &varList) |
virtual void | registerDepSolnLIDs (const std::vector< IdVector > &depSolnLIDVecRef) |
virtual void | registerDepStateLIDs (const std::vector< IdVector > &depStaLIDVecRef) |
virtual void | registerDepStoreLIDs (const std::vector< IdVector > &depStoLIDVecRef) |
virtual void | registerGIDData (const std::vector< int > &counts, const IdVector &GIDs, const JacobianStamp &jacGIDs) |
virtual void | setupPointers () |
virtual const IdVector & | getDepSolnGIDVec () |
virtual const IndexPairVector & | getIndexPairList () |
virtual bool | getInstanceBreakPoints (std::vector< Util::BreakPoint > &breakPointTimes) |
virtual bool | updateSource () |
virtual bool | processInstanceParams () |
virtual bool | isConverged () |
virtual bool | testDAEMatrices (const std::vector< const std::string * > &nameVec) |
virtual bool | loadTrivialDAE_FMatrixStamp () |
bool | trivialStampLoader (Linear::Matrix *matPtr) |
bool | zeroMatrixDiagonal (Linear::Matrix *matPtr) |
virtual bool | plotfileFlag () |
virtual void | loadErrorWeightMask () |
virtual void | acceptStep () |
virtual bool | loadDAEBVector () |
virtual int | getNumNoiseSources () const |
virtual void | setupNoiseSources (Xyce::Analysis::NoiseData &noiseDataVec) |
virtual void | getNoiseSources (Xyce::Analysis::NoiseData &noiseDataVec) |
const InstanceName & | getName () const |
int | getNumIntVars () const |
int | getNumExtVars () const |
int | getNumStateVars () const |
int | getNumStoreVars () const |
int | getNumBranchDataVars () const |
void | setNumStoreVars (int num_store_vars) |
void | setNumBranchDataVars (int num_branch_data_vars) |
virtual const std::vector< int > & | getDevConMap () |
virtual DeviceState * | getInternalState () |
virtual bool | setInternalState (const DeviceState &state) |
virtual bool | loadDFDV (int iElectrode, Linear::Vector *dfdvPtr) |
virtual bool | calcConductance (int iElectrode, const Linear::Vector *dxdvPtr) |
virtual bool | outputPlotFiles (bool force_final_output) |
virtual bool | enablePDEContinuation (int &max_PDE_continuation_steps) |
virtual bool | disablePDEContinuation () |
virtual void | setPDEContinuationAlpha (double alpha) |
virtual void | setPDEContinuationBeta (double beta) |
virtual bool | setInitialGuess () |
virtual double | getMaxTimeStepSize () |
bool | getOrigFlag () const |
void | setOrigFlag (bool origFlag_local) |
const IdVector & | getDevLIDs () const |
const std::vector< IdVector > & | getDevJacLIDs () const |
const IdVector & | getStaLIDVec () const |
bool | getMergeRowColChecked () const |
void | setMergeRowColChecked (bool mergeRowColChecked_local) |
const MatrixLoadData & | getMatrixLoadData () const |
MatrixLoadData & | getMatrixLoadData () |
const ExternData & | getExternData () const |
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DeviceEntity (ParametricData< void > ¶metric_data, const SolverState &solver_state, const DeviceOptions &device_options, const std::string &netlist_filename, int netlist_line) | |
virtual | ~DeviceEntity () |
virtual CompositeParam * | constructComposite (const std::string &composite_name, const std::string ¶m_name) |
bool | setDefaultParam (double val, bool overrideOriginal=false) |
double | getDefaultParam () const |
bool | scaleParam (const std::string ¶mName, double val, double val0) |
bool | scaleParam (const std::string ¶mName, double val) |
bool | scaleDefaultParam (double val) |
bool | analyticSensitivityAvailable (const std::string ¶mName) |
bool | analyticSensitivityAvailableDefaultParam () |
bool | getAnalyticSensitivity (const std::string ¶mName, std::vector< double > &dfdpVec, std::vector< double > &dqdpVec, std::vector< double > &dbdpVec, std::vector< int > &FindicesVec, std::vector< int > &QindicesVec, std::vector< int > &BindicesVec) |
bool | getAnalyticSensitivityDefaultParam (std::vector< double > &dfdpVec, std::vector< double > &dqdpVec, std::vector< double > &dbdpVec, std::vector< int > &FindicesVec, std::vector< int > &QindicesVec, std::vector< int > &BindicesVec) |
bool | setParam (const std::string ¶mName, double val, bool overrideOriginal=false) |
bool | getParam (const std::string ¶mName, double &result) const |
bool | findParam (const std::string ¶m_name) const |
bool | getParamBreakpoints (std::vector< Util::BreakPoint > &) |
bool | updateDependentParameters (const Linear::Vector &vars) |
bool | updateDependentParameters (double temp_tmp) |
bool | updateGlobalParameters (GlobalParameterMap &) |
bool | updateDependentParameters () |
double | setDependentParameter (Util::Param &, double *, ParameterType::ExprAccess) |
double | setDependentParameter (Util::Param &, std::vector< double > *, int, ParameterType::ExprAccess) |
void | setDependentParameter (Util::Param &par, Depend &dependentParam, ParameterType::ExprAccess depend) |
void | setDefaultParams () |
void | setParams (const std::vector< Param > ¶ms) |
bool | given (const std::string ¶meter_name) const |
void | setDefaultParamName (const std::string &default_param_name) |
const std::vector< Depend > & | getDependentParams () |
void | addDependentParameter (const Depend ¶m) |
const DeviceOptions & | getDeviceOptions () const |
const SolverState & | getSolverState () const |
const NetlistLocation & | netlistLocation () const |
const ParameterMap & | getParameterMap () const |
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ParameterBase () | |
virtual | ~ParameterBase () |
double | getOriginalValue (int serial_number) |
void | setOriginalValue (int serial_number, double value) |
bool | wasValueGiven (int serial_number) const |
void | setValueGiven (int serial_number, bool value) |
Private Member Functions | |
Instance (const Instance &) | |
Instance & | operator= (const Instance &) |
Private Attributes | |
Model & | model_ |
double | rInt |
double | radius |
double | length |
double | segArea |
int | nSeg |
bool | rIntGiven |
bool | radiusGiven |
bool | lengthGiven |
bool | nSegGiven |
double | gSeg |
int | numIntVarsPerSegment |
int | numStateVarsPerSegment |
std::vector< int > | li_internalVars |
std::vector< std::vector< int > > | jacobianOffsets |
double | kcl1Fvalue |
double | kcl2Fvalue |
std::vector< double > | segFvalue |
std::vector< double > | segQvalue |
std::vector< double > | segNEquFvalue |
std::vector< double > | segNEquQvalue |
std::vector< double > | segMEquFvalue |
std::vector< double > | segMEquQvalue |
std::vector< double > | segHEquFvalue |
std::vector< double > | segHEquQvalue |
std::vector< double > | segAEquFvalue |
std::vector< double > | segAEquQvalue |
std::vector< double > | segBEquFvalue |
std::vector< double > | segBEquQvalue |
std::vector< double > | segM_EquFvalue |
std::vector< double > | segM_EquQvalue |
std::vector< double > | segH_EquFvalue |
std::vector< double > | segH_EquQvalue |
std::vector< double > | segCEquFvalue |
std::vector< double > | segCEquQvalue |
std::vector< double > | segCaEquFvalue |
std::vector< double > | segCaEquQvalue |
double | dkcl1F_dVin |
double | dkcl1F_dVs0 |
double | dkcl2F_dVout |
double | dkcl2F_dVsn |
std::vector< double > | segF_dVp |
std::vector< double > | segF_dV |
std::vector< double > | segF_dVn |
std::vector< double > | segF_dn |
std::vector< double > | segF_dm |
std::vector< double > | segF_dh |
std::vector< double > | segF_da |
std::vector< double > | segF_db |
std::vector< double > | segF_dM |
std::vector< double > | segF_dH |
std::vector< double > | segF_dc |
std::vector< double > | segQ_dV |
std::vector< double > | dnF_dV |
std::vector< double > | dnF_dn |
std::vector< double > | dnQ_dn |
std::vector< double > | dmF_dV |
std::vector< double > | dmF_dm |
std::vector< double > | dmQ_dm |
std::vector< double > | dhF_dV |
std::vector< double > | dhF_dh |
std::vector< double > | dhQ_dh |
std::vector< double > | daF_dV |
std::vector< double > | daF_da |
std::vector< double > | daQ_da |
std::vector< double > | dbF_dV |
std::vector< double > | dbF_db |
std::vector< double > | dbQ_db |
std::vector< double > | dMF_dV |
std::vector< double > | dMF_dM |
std::vector< double > | dMQ_dM |
std::vector< double > | dHF_dV |
std::vector< double > | dHF_dH |
std::vector< double > | dHQ_dH |
std::vector< double > | dcF_dV |
std::vector< double > | dcF_dc |
std::vector< double > | dcF_dCa |
std::vector< double > | dcQ_dc |
std::vector< double > | dCaF_dV |
std::vector< double > | dCaF_dM |
std::vector< double > | dCaF_dH |
std::vector< double > | dCaF_dCa |
std::vector< double > | dCaQ_dCa |
std::vector< double > | potassiumCurrent |
std::vector< double > | sodiumCurrent |
std::vector< int > | li_KCurrentState |
std::vector< int > | li_NaCurrentState |
int | li_Pos |
int | li_Neg |
std::vector< int > | li_Vol |
std::vector< int > | li_nPro |
std::vector< int > | li_mPro |
std::vector< int > | li_hPro |
std::vector< int > | li_aPro |
std::vector< int > | li_bPro |
std::vector< int > | li_MPro |
std::vector< int > | li_HPro |
std::vector< int > | li_cPro |
std::vector< int > | li_CaPro |
int | APosEquPosNodeOffset |
int | APosEquNextNodeOffset |
int | ANegEquNegNodeOffset |
int | ANegEquLastNodeOffset |
std::vector< int > | SegVEqnVpreOffset |
std::vector< int > | SegVEqnVsegOffset |
std::vector< int > | SegVEqnVnexOffset |
std::vector< int > | SegVEqnNOffset |
std::vector< int > | SegVEqnMOffset |
std::vector< int > | SegVEqnHOffset |
std::vector< int > | SegVEqnAOffset |
std::vector< int > | SegVEqnBOffset |
std::vector< int > | SegVEqnM_Offset |
std::vector< int > | SegVEqnH_Offset |
std::vector< int > | SegVEqnCOffset |
std::vector< int > | NEquVNodeOffset |
std::vector< int > | NEquNNodeOffset |
std::vector< int > | MEquVNodeOffset |
std::vector< int > | MEquMNodeOffset |
std::vector< int > | HEquVNodeOffset |
std::vector< int > | HEquHNodeOffset |
std::vector< int > | AEquVNodeOffset |
std::vector< int > | AEquANodeOffset |
std::vector< int > | BEquVNodeOffset |
std::vector< int > | BEquBNodeOffset |
std::vector< int > | M_EquVNodeOffset |
std::vector< int > | M_EquM_NodeOffset |
std::vector< int > | H_EquVNodeOffset |
std::vector< int > | H_EquH_NodeOffset |
std::vector< int > | CEquVNodeOffset |
std::vector< int > | CEquCNodeOffset |
std::vector< int > | CEquCaNodeOffset |
std::vector< int > | CaEquVNodeOffset |
std::vector< int > | CaEquM_NodeOffset |
std::vector< int > | CaEquH_NodeOffset |
std::vector< int > | CaEquCaNodeOffset |
std::map< int, int > | prevMap |
std::map< int, int > | segMap |
std::map< int, int > | nextMap |
std::vector< std::vector< int > > | jacStamp |
Friends | |
class | ParametricData< Instance > |
class | Model |
class | Traits |
Additional Inherited Members | |
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std::vector< int > & | cols |
std::vector< double > & | vals |
NumericalJacobian * | numJacPtr |
bool | psLoaded |
bool | ssLoaded |
bool | rhsLoaded |
bool | origFlag |
int | numIntVars |
int | numExtVars |
int | numStateVars |
int | numStoreVars |
int | numLeadCurrentVars |
int | numLeadCurrentStoreVars |
bool | loadLeadCurrent |
int | numBranchDataVars |
int | numBranchDataVarsIfAllocated |
std::vector< int > | devConMap |
bool | mergeRowColChecked |
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void | jacStampMap (const JacobianStamp &stamp_parent, IdVector &map_parent, JacobianStamp &map2_parent, JacobianStamp &stamp, IdVector &map, JacobianStamp &map2, int from, int to, int original_size) |
void | jacStampMap_fixOrder (const JacobianStamp &stamp_parent, JacobianStamp &map2_parent, JacobianStamp &stamp, JacobianStamp &map2) |
void | outputJacStamp (const JacobianStamp &jac) |
void | outputJacMaps (const std::vector< int > &jacMap, const JacobianStamp &jacMap2) |
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const ExternData & | extData |
IndexPairVector | indexPairList |
IndexPairVector | intGIDList |
IndexPairVector | extGIDList |
IndexPairVector | staGIDList |
IdVector | intLIDVec |
IdVector | extLIDVec |
IdVector | staLIDVec |
IdVector | stoLIDVec |
IdVector | devLIDs |
devLIDs is a combined LID vector, containing int, ext, and expVar ID's. More... | |
JacobianStamp | devJacLIDs |
DeviceSupport | devSupport |
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std::vector< int > | expVarGIDs |
std::vector< int > | expVarLIDs |
std::vector< std::string > | expVarNames |
std::vector< double > | expVarVals |
std::vector< double > | eVarVals |
Definition at line 90 of file N_DEV_Neuron6.h.
Xyce::Device::Neuron6::Instance::Instance | ( | const Configuration & | configuration, |
const InstanceBlock & | IB, | ||
Model & | Miter, | ||
const FactoryBlock & | factory_block | ||
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Definition at line 292 of file N_DEV_Neuron6.C.
Xyce::Device::Neuron6::Instance::~Instance | ( | ) |
Definition at line 609 of file N_DEV_Neuron6.C.
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void Xyce::Device::Neuron6::Instance::auxDAECalculations | ( | ) |
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Definition at line 143 of file N_DEV_Neuron6.h.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 854 of file N_DEV_Neuron6.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1215 of file N_DEV_Neuron6.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1170 of file N_DEV_Neuron6.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1106 of file N_DEV_Neuron6.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1059 of file N_DEV_Neuron6.C.
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Populates and returns the store name map.
Implements Xyce::Device::DeviceInstance.
Definition at line 788 of file N_DEV_Neuron6.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 621 of file N_DEV_Neuron6.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 867 of file N_DEV_Neuron6.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 695 of file N_DEV_Neuron6.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 826 of file N_DEV_Neuron6.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 1265 of file N_DEV_Neuron6.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1008 of file N_DEV_Neuron6.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1022 of file N_DEV_Neuron6.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 1037 of file N_DEV_Neuron6.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 681 of file N_DEV_Neuron6.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 1280 of file N_DEV_Neuron6.C.
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