Xyce
6.1
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#include <N_DEV_Neuron3.h>
Public Member Functions | |
Instance (const Configuration &configuration, const InstanceBlock &IB, Model &Miter, const FactoryBlock &factory_block) | |
~Instance () | |
void | registerLIDs (const std::vector< int > &intLIDVecRef, const std::vector< int > &extLIDVecRef) |
void | registerStateLIDs (const std::vector< int > &staLIDVecRef) |
void | loadNodeSymbols (Util::SymbolTable &symbol_table) const |
Populates and returns the store name map. More... | |
const std::vector< std::vector< int > > & | jacobianStamp () const |
void | registerJacLIDs (const std::vector< std::vector< int > > &jacLIDVec) |
bool | processParams () |
bool | updateTemperature (const double &temp_tmp) |
bool | updateIntermediateVars () |
bool | updatePrimaryState () |
bool | updateSecondaryState () |
bool | setIC () |
void | varTypes (std::vector< char > &varTypeVec) |
bool | loadDAEQVector () |
bool | loadDAEFVector () |
void | auxDAECalculations () |
bool | loadDAEdQdx () |
bool | loadDAEdFdx () |
Model & | getModel () |
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DeviceInstance (const InstanceBlock &instance_block, ParametricData< void > ¶metric_data, const FactoryBlock &factory_block) | |
virtual | ~DeviceInstance () |
virtual std::ostream & | printName (std::ostream &os) const |
virtual void | enableLeadCurrentCalc () |
virtual void | registerGIDs (const IndexPairVector &intGIDListRef, const IndexPairVector &extGIDListRef) |
virtual void | registerStateGIDs (const IndexPairVector &staGIDListRef) |
virtual void | registerStoreGIDs (const IndexPairVector &stoGIDListRef) |
virtual void | registerStoreLIDs (const LocalIdVector &stoLIDVecRef) |
virtual void | registerBranchDataLIDs (const LocalIdVector &branchDataLIDVecRef) |
virtual const std::vector< std::string > & | getDepSolnVars () |
virtual void | registerDepSolnGIDs (const std::vector< IdVector > &varList) |
virtual const std::vector< std::string > & | getDepStateVars () |
virtual void | registerDepStateGIDs (const std::vector< IdVector > &varList) |
virtual const std::vector< std::string > & | getDepStoreVars () |
virtual void | registerDepStoreGIDs (const std::vector< IdVector > &varList) |
virtual const std::vector< std::string > & | getDepLeadCurrentVars () |
virtual void | registerDepLeadCurrentGIDs (const std::vector< IdVector > &varList) |
virtual void | registerDepSolnLIDs (const std::vector< IdVector > &depSolnLIDVecRef) |
virtual void | registerDepStateLIDs (const std::vector< IdVector > &depStaLIDVecRef) |
virtual void | registerDepStoreLIDs (const std::vector< IdVector > &depStoLIDVecRef) |
virtual void | registerGIDData (const std::vector< int > &counts, const IdVector &GIDs, const JacobianStamp &jacGIDs) |
virtual void | setupPointers () |
virtual const IdVector & | getDepSolnGIDVec () |
virtual const IndexPairVector & | getIndexPairList () |
virtual bool | getInstanceBreakPoints (std::vector< Util::BreakPoint > &breakPointTimes) |
virtual bool | updateSource () |
virtual bool | processInstanceParams () |
virtual bool | isConverged () |
virtual bool | testDAEMatrices (const std::vector< const std::string * > &nameVec) |
virtual bool | loadTrivialDAE_FMatrixStamp () |
bool | trivialStampLoader (Linear::Matrix *matPtr) |
bool | zeroMatrixDiagonal (Linear::Matrix *matPtr) |
virtual bool | plotfileFlag () |
virtual void | loadErrorWeightMask () |
virtual void | acceptStep () |
virtual bool | loadDAEBVector () |
virtual int | getNumNoiseSources () const |
virtual void | setupNoiseSources (Xyce::Analysis::NoiseData &noiseDataVec) |
virtual void | getNoiseSources (Xyce::Analysis::NoiseData &noiseDataVec) |
const InstanceName & | getName () const |
int | getNumIntVars () const |
int | getNumExtVars () const |
int | getNumStateVars () const |
int | getNumStoreVars () const |
int | getNumBranchDataVars () const |
void | setNumStoreVars (int num_store_vars) |
void | setNumBranchDataVars (int num_branch_data_vars) |
virtual const std::vector< int > & | getDevConMap () |
virtual DeviceState * | getInternalState () |
virtual bool | setInternalState (const DeviceState &state) |
virtual bool | loadDFDV (int iElectrode, Linear::Vector *dfdvPtr) |
virtual bool | calcConductance (int iElectrode, const Linear::Vector *dxdvPtr) |
virtual bool | outputPlotFiles () |
virtual bool | enablePDEContinuation (int &max_PDE_continuation_steps) |
virtual bool | disablePDEContinuation () |
virtual void | setPDEContinuationAlpha (double alpha) |
virtual void | setPDEContinuationBeta (double beta) |
virtual bool | setInitialGuess () |
virtual double | getMaxTimeStepSize () |
bool | getOrigFlag () const |
void | setOrigFlag (bool origFlag_local) |
const IdVector & | getDevLIDs () const |
const std::vector< IdVector > & | getDevJacLIDs () const |
const IdVector & | getStaLIDVec () const |
bool | getMergeRowColChecked () const |
void | setMergeRowColChecked (bool mergeRowColChecked_local) |
const MatrixLoadData & | getMatrixLoadData () const |
MatrixLoadData & | getMatrixLoadData () |
const ExternData & | getExternData () const |
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DeviceEntity (ParametricData< void > ¶metric_data, const SolverState &solver_state, const DeviceOptions &device_options, const std::string &netlist_filename, int netlist_line) | |
virtual | ~DeviceEntity () |
virtual CompositeParam * | constructComposite (const std::string &composite_name, const std::string ¶m_name) |
bool | setDefaultParam (double val, bool overrideOriginal=false) |
double | getDefaultParam () const |
bool | scaleParam (const std::string ¶mName, double val, double val0) |
bool | scaleParam (const std::string ¶mName, double val) |
bool | scaleDefaultParam (double val) |
bool | analyticSensitivityAvailable (const std::string ¶mName) |
bool | getAnalyticSensitivity (const std::string ¶mName, std::vector< double > &dfdpVec, std::vector< double > &dqdpVec, std::vector< double > &dbdpVec, std::vector< int > &FindicesVec, std::vector< int > &QindicesVec, std::vector< int > &BindicesVec) |
bool | setParam (const std::string ¶mName, double val, bool overrideOriginal=false) |
bool | getParam (const std::string ¶mName, double &result) const |
bool | getParamBreakpoints (std::vector< Util::BreakPoint > &) |
bool | updateDependentParameters (Linear::Vector &vars) |
bool | updateDependentParameters (double temp_tmp) |
bool | updateGlobalParameters (GlobalParameterMap &) |
bool | updateDependentParameters () |
double | setDependentParameter (Util::Param &, double *, ParameterType::ExprAccess) |
double | setDependentParameter (Util::Param &, std::vector< double > *, int, ParameterType::ExprAccess) |
void | setDependentParameter (Util::Param &par, Depend &dependentParam, ParameterType::ExprAccess depend) |
void | setDefaultParams () |
void | setParams (const std::vector< Param > ¶ms) |
bool | given (const std::string ¶meter_name) const |
void | setDefaultParamName (const std::string &default_param_name) |
const std::vector< Depend > & | getDependentParams () |
void | addDependentParameter (const Depend ¶m) |
const DeviceOptions & | getDeviceOptions () const |
const SolverState & | getSolverState () const |
const NetlistLocation & | netlistLocation () const |
const ParameterMap & | getParameterMap () const |
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ParameterBase () | |
virtual | ~ParameterBase () |
double | getOriginalValue (int serial_number) |
void | setOriginalValue (int serial_number, double value) |
bool | wasValueGiven (int serial_number) const |
void | setValueGiven (int serial_number, bool value) |
Private Member Functions | |
Instance (const Instance &) | |
Instance & | operator= (const Instance &) |
Static Private Member Functions | |
template<typename ScalarT > | |
static ScalarT | alphaN (const ScalarT &Vn1, const ScalarT &Vrest) |
template<typename ScalarT > | |
static ScalarT | betaN (const ScalarT &Vn1, const ScalarT &Vrest) |
template<typename ScalarT > | |
static ScalarT | alphaM (const ScalarT &Vn1, const ScalarT &Vrest) |
template<typename ScalarT > | |
static ScalarT | betaM (const ScalarT &Vn1, const ScalarT &Vrest) |
template<typename ScalarT > | |
static ScalarT | alphaH (const ScalarT &Vn1, const ScalarT &Vrest) |
template<typename ScalarT > | |
static ScalarT | betaH (const ScalarT &Vn1, const ScalarT &Vrest) |
template<typename ScalarT > | |
static ScalarT | kcl1EquF (const ScalarT &VSeg, const ScalarT &VSegP, const ScalarT &VSegN, const ScalarT &n, const ScalarT &m, const ScalarT &h, const ScalarT &gPrev, const ScalarT &gNext, const ScalarT &memG, const ScalarT &restV, const ScalarT &Kg, const ScalarT &Ke, const ScalarT &NaG, const ScalarT &NaE) |
template<typename ScalarT > | |
static ScalarT | kcl1EquQ (const ScalarT &VSeg, const ScalarT &memC) |
template<typename ScalarT > | |
static ScalarT | nEquF (const ScalarT &Vn1, const ScalarT &n, const ScalarT &Vrest) |
template<typename ScalarT > | |
static ScalarT | nEquQ (const ScalarT &n) |
template<typename ScalarT > | |
static ScalarT | mEquF (const ScalarT &Vn1, const ScalarT &m, const ScalarT &Vrest) |
template<typename ScalarT > | |
static ScalarT | mEquQ (const ScalarT &m) |
template<typename ScalarT > | |
static ScalarT | hEquF (const ScalarT &Vn1, const ScalarT &h, const ScalarT &Vrest) |
template<typename ScalarT > | |
static ScalarT | hEquQ (const ScalarT &h) |
Private Attributes | |
Model & | model_ |
std::vector< std::vector< int > > | jacStamp |
double | rInt |
double | radius |
double | length |
double | segArea |
int | nSeg |
bool | rIntGiven |
bool | radiusGiven |
bool | lengthGiven |
bool | nSegGiven |
double | rIntPrevious |
double | radiusPrevious |
double | lengthPrevious |
double | rIntNext |
double | radiusNext |
double | lengthNext |
bool | rIntPreviousGiven |
bool | radiusPreviousGiven |
bool | lengthPreviousGiven |
bool | rIntNextGiven |
bool | radiusNextGiven |
bool | lengthNextGiven |
std::vector< double > | gBackward |
std::vector< double > | gForward |
double | kcl1Fvalue |
double | kcl2Fvalue |
std::vector< double > | segFvalue |
std::vector< double > | segQvalue |
std::vector< double > | segNEquFvalue |
std::vector< double > | segNEquQvalue |
std::vector< double > | segMEquFvalue |
std::vector< double > | segMEquQvalue |
std::vector< double > | segHEquFvalue |
std::vector< double > | segHEquQvalue |
double | dkcl1F_dVin |
double | dkcl1F_dVs0 |
double | dkcl2F_dVout |
double | dkcl2F_dVsn |
std::vector< double > | segF_dVp |
std::vector< double > | segF_dV |
std::vector< double > | segF_dVn |
std::vector< double > | segF_dn |
std::vector< double > | segF_dm |
std::vector< double > | segF_dh |
std::vector< double > | segQ_dV |
std::vector< double > | dnF_dV |
std::vector< double > | dnF_dn |
std::vector< double > | dnQ_dn |
std::vector< double > | dmF_dV |
std::vector< double > | dmF_dm |
std::vector< double > | dmQ_dm |
std::vector< double > | dhF_dV |
std::vector< double > | dhF_dh |
std::vector< double > | dhQ_dh |
std::vector< double > | potassiumCurrent |
std::vector< double > | sodiumCurrent |
std::vector< int > | li_KCurrentState |
std::vector< int > | li_NaCurrentState |
int | li_Pos |
int | li_Neg |
std::vector< int > | li_Vol |
std::vector< int > | li_nPro |
std::vector< int > | li_mPro |
std::vector< int > | li_hPro |
int | APosEquPosNodeOffset |
int | APosEquNextNodeOffset |
int | ANegEquNegNodeOffset |
int | ANegEquLastNodeOffset |
std::vector< int > | SegVEqnVpreOffset |
std::vector< int > | SegVEqnVsegOffset |
std::vector< int > | SegVEqnVnexOffset |
std::vector< int > | SegVEqnNOffset |
std::vector< int > | SegVEqnMOffset |
std::vector< int > | SegVEqnHOffset |
std::vector< int > | NEquVNodeOffset |
std::vector< int > | NEquNNodeOffset |
std::vector< int > | MEquVNodeOffset |
std::vector< int > | MEquMNodeOffset |
std::vector< int > | HEquVNodeOffset |
std::vector< int > | HEquHNodeOffset |
Friends | |
class | ParametricData< Instance > |
class | Model |
class | Traits |
Additional Inherited Members | |
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std::vector< int > & | cols |
std::vector< double > & | vals |
NumericalJacobian * | numJacPtr |
bool | psLoaded |
bool | ssLoaded |
bool | rhsLoaded |
bool | origFlag |
int | numIntVars |
int | numExtVars |
int | numStateVars |
int | numStoreVars |
int | numLeadCurrentVars |
int | numLeadCurrentStoreVars |
bool | loadLeadCurrent |
int | numBranchDataVars |
int | numBranchDataVarsIfAllocated |
std::vector< int > | devConMap |
bool | mergeRowColChecked |
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void | jacStampMap (const JacobianStamp &stamp_parent, IdVector &map_parent, JacobianStamp &map2_parent, JacobianStamp &stamp, IdVector &map, JacobianStamp &map2, int from, int to, int original_size) |
void | jacStampMap_fixOrder (const JacobianStamp &stamp_parent, JacobianStamp &map2_parent, JacobianStamp &stamp, JacobianStamp &map2) |
void | outputJacStamp (const JacobianStamp &jac) |
void | outputJacMaps (const std::vector< int > &jacMap, const JacobianStamp &jacMap2) |
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const ExternData & | extData |
IndexPairVector | indexPairList |
IndexPairVector | intGIDList |
IndexPairVector | extGIDList |
IndexPairVector | staGIDList |
IdVector | intLIDVec |
IdVector | extLIDVec |
IdVector | staLIDVec |
IdVector | stoLIDVec |
IdVector | devLIDs |
devLIDs is a combined LID vector, containing int, ext, and expVar ID's. More... | |
JacobianStamp | devJacLIDs |
DeviceSupport | devSupport |
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std::vector< int > | expVarGIDs |
std::vector< int > | expVarLIDs |
std::vector< std::string > | expVarNames |
std::vector< double > | expVarVals |
std::vector< double > | eVarVals |
Definition at line 89 of file N_DEV_Neuron3.h.
Xyce::Device::Neuron3::Instance::Instance | ( | const Configuration & | configuration, |
const InstanceBlock & | IB, | ||
Model & | Miter, | ||
const FactoryBlock & | factory_block | ||
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Definition at line 289 of file N_DEV_Neuron3.C.
Xyce::Device::Neuron3::Instance::~Instance | ( | ) |
Definition at line 574 of file N_DEV_Neuron3.C.
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Definition at line 156 of file N_DEV_Neuron3.h.
void Xyce::Device::Neuron3::Instance::auxDAECalculations | ( | ) |
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 684 of file N_DEV_Neuron3.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1108 of file N_DEV_Neuron3.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1079 of file N_DEV_Neuron3.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1050 of file N_DEV_Neuron3.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 1019 of file N_DEV_Neuron3.C.
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Populates and returns the store name map.
If the DeviceInstance::storeNameMap is empty, populate it.
For the purpose of lead currents, store vector elements must be given names that can be used to locate lead currents at print time. When a netlist attempts to print, say, "I(R1)" the output code looks for an entry in the store vector named R1:DEV_I.
This method does the assignment of names to various vector elements.
Implements Xyce::Device::DeviceInstance.
Definition at line 640 of file N_DEV_Neuron3.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 256 of file N_DEV_Neuron3.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 697 of file N_DEV_Neuron3.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 586 of file N_DEV_Neuron3.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 661 of file N_DEV_Neuron3.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 1148 of file N_DEV_Neuron3.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 767 of file N_DEV_Neuron3.C.
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Implements Xyce::Device::DeviceInstance.
Definition at line 971 of file N_DEV_Neuron3.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 997 of file N_DEV_Neuron3.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 275 of file N_DEV_Neuron3.C.
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Reimplemented from Xyce::Device::DeviceInstance.
Definition at line 1163 of file N_DEV_Neuron3.C.
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