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Xyce::Device::NeuronPop1::Instance Class Reference

#include <N_DEV_NeuronPop1.h>

Inheritance diagram for Xyce::Device::NeuronPop1::Instance:
Collaboration diagram for Xyce::Device::NeuronPop1::Instance:

Public Member Functions

 Instance (const Configuration &configuration, const InstanceBlock &IB, Model &Miter, const FactoryBlock &factory_block)
 
 ~Instance ()
 
void registerLIDs (const std::vector< int > &intLIDVecRef, const std::vector< int > &extLIDVecRef)
 
void registerStateLIDs (const std::vector< int > &staLIDVecRef)
 
std::map< int, std::string > & getIntNameMap ()
 
bool loadDeviceMask ()
 
const std::vector< std::vector
< int > > & 
jacobianStamp () const
 
void registerJacLIDs (const std::vector< std::vector< int > > &jacLIDVec)
 
bool processParams ()
 
bool updateTemperature (const double &temp_tmp)
 
bool getInstanceBreakPoints (std::vector< N_UTL_BreakPoint > &breakPointTimes)
 
bool updateIntermediateVars ()
 
bool updatePrimaryState ()
 
bool updateSecondaryState ()
 
bool setIC ()
 
void varTypes (std::vector< char > &varTypeVec)
 
bool loadDAEQVector ()
 
bool loadDAEFVector ()
 
void auxDAECalculations ()
 
bool loadDAEdQdx ()
 
bool loadDAEdFdx ()
 
bool plotfileFlag ()
 
bool outputPlotFiles ()
 
ModelgetModel ()
 
- Public Member Functions inherited from Xyce::Device::DeviceInstance
 DeviceInstance (const InstanceBlock &instance_block, ParametricData< void > &parametric_data, const FactoryBlock &factory_block)
 
virtual ~DeviceInstance ()
 
virtual void enableLeadCurrentCalc ()
 
virtual void registerGIDs (const std::list< index_pair > &intGIDListRef, const std::list< index_pair > &extGIDListRef)
 
virtual void registerStateGIDs (const std::list< index_pair > &staGIDListRef)
 
virtual void registerStoreGIDs (const std::list< index_pair > &stoGIDListRef)
 
virtual void registerStoreLIDs (const std::vector< int > &stoLIDVecRef)
 
virtual const std::vector
< std::string > & 
getDepSolnVars ()
 
virtual void registerDepSolnGIDs (const std::vector< std::vector< int > > &varList)
 
virtual const std::vector
< std::string > & 
getDepStateVars ()
 
virtual void registerDepStateGIDs (const std::vector< std::vector< int > > &varList)
 
virtual const std::vector
< std::string > & 
getDepStoreVars ()
 
virtual void registerDepStoreGIDs (const std::vector< std::vector< int > > &varList)
 
virtual void registerDepSolnLIDs (const std::vector< std::vector< int > > &depSolnLIDVecRef)
 
virtual void registerDepStateLIDs (const std::vector< std::vector< int > > &depStaLIDVecRef)
 
virtual void registerDepStoreLIDs (const std::vector< std::vector< int > > &depStoLIDVecRef)
 
virtual void registerGIDData (const std::vector< int > &counts, const std::vector< int > &GIDs, const std::vector< std::vector< int > > &jacGIDs)
 
virtual void setupPointers ()
 
virtual void getDepSolnGIDVec (std::vector< int > &depGIDVec)
 
virtual bool getIndexPairList (std::list< index_pair > &iplRef)
 
virtual bool updateSource ()
 
virtual bool processInstanceParams ()
 
virtual bool isConverged ()
 
virtual bool testDAEMatrices (std::vector< std::string > &nameVec)
 
virtual bool loadTrivialDAE_FMatrixStamp ()
 
bool trivialStampLoader (N_LAS_Matrix *matPtr)
 
bool zeroMatrixDiagonal (N_LAS_Matrix *matPtr)
 
virtual void acceptStep ()
 
int getNumIntVars () const
 
int getNumExtVars () const
 
int getNumStateVars () const
 
int getNumStoreVars () const
 
void setNumStoreVars (int num_store_vars)
 
virtual void getDevConMap (std::vector< int > &)
 
virtual DeviceStategetInternalState ()
 
virtual bool setInternalState (const DeviceState &state)
 
virtual bool loadDFDV (int iElectrode, N_LAS_Vector *dfdvPtr)
 
virtual bool calcConductance (int iElectrode, const N_LAS_Vector *dxdvPtr)
 
virtual std::map< int,
std::string > & 
getStateNameMap ()
 
virtual std::map< int,
std::string > & 
getStoreNameMap ()
 
void spiceInternalName (std::string &tmpname)
 
virtual bool enablePDEContinuation ()
 
virtual bool disablePDEContinuation ()
 
virtual void setPDEContinuationAlpha (double alpha)
 
virtual void setPDEContinuationBeta (double beta)
 
virtual bool setInitialGuess ()
 
virtual double getMaxTimeStepSize ()
 
bool getOrigFlag () const
 
void setOrigFlag (bool origFlag_local)
 
const std::vector< int > & getDevLIDs () const
 
const std::vector< std::vector
< int > > & 
getDevJacLIDs () const
 
const std::vector< int > & getStaLIDVec () const
 
bool getMergeRowColChecked () const
 
void setMergeRowColChecked (bool mergeRowColChecked_local)
 
const MatrixLoadDatagetMatrixLoadData () const
 
MatrixLoadDatagetMatrixLoadData ()
 
- Public Member Functions inherited from Xyce::Device::DeviceEntity
 DeviceEntity (const char *const entity_type, const std::string &device_name, ParametricData< void > &parametric_data, const SolverState &solver_state, const DeviceOptions &device_options, const std::string &netlist_path, int netlist_line)
 
virtual ~DeviceEntity ()
 
virtual CompositeParamconstructComposite (const std::string &composite_name, const std::string &param_name)
 
bool setDefaultParam (double val)
 
double getDefaultParam ()
 
bool scaleParam (const std::string &paramName, double val, double val0)
 
bool scaleParam (const std::string &paramName, double val)
 
bool scaleDefaultParam (double val)
 
bool setParam (const std::string &paramName, double val)
 
bool getParam (const std::string &paramName, double &result)
 
bool getParamBreakpoints (std::vector< Util::BreakPoint > &)
 
bool updateDependentParameters (N_LAS_Vector &vars)
 
bool updateDependentParameters (double temp_tmp)
 
bool updateGlobalParameters (std::map< std::string, double > &)
 
bool updateDependentParameters ()
 
double setDependentParameter (Util::Param &, double *, ParameterType::ExprAccess)
 
double setDependentParameter (Util::Param &, std::vector< double > *, int, ParameterType::ExprAccess)
 
void setDependentParameter (Util::Param &par, Depend &dependentParam, ParameterType::ExprAccess depend)
 
void setDefaultParams ()
 
void setParams (const std::vector< Param > &params)
 
bool given (const std::string &parameter_name) const
 
const char * getEntityType () const
 
const std::string & getName () const
 
void setDefaultParamName (const std::string &default_param_name)
 
const std::vector< Depend > & getDependentParams ()
 
const DeviceOptionsgetDeviceOptions () const
 
const SolverStategetSolverState () const
 
const NetlistLocation & netlistLocation () const
 
const ParameterMapgetParameterMap () const
 
- Public Member Functions inherited from Xyce::Device::ParameterBase
 ParameterBase ()
 
double getOriginalValue (int serial_number)
 
void setOriginalValue (int serial_number, double value)
 
bool wasValueGiven (int serial_number) const
 
void setValueGiven (int serial_number, bool value)
 

Private Member Functions

 Instance (const Instance &)
 
Instanceoperator= (const Instance &)
 
void initializePopulation ()
 
void updatePopulation ()
 

Private Attributes

Modelmodel_
 
std::vector< std::vector< int > > jacStamp
 
int liNodeIn
 
int liNodeOut
 
std::vector< int > liNeuronPopState
 
bool populationInitialized
 
double lastPopulationUpdateTime
 
double lastNeurogenesisUpdateTime
 
int neuronPopSize
 
std::vector< std::string > connectionTargetPopulation
 
bool connectionTargetPopulationGiven
 
Teuchos::RefCountPtr
< std::ofstream > 
outputFileStreamPtr
 
bool outputPopulationVarsFlag
 
bool newStateToOutput
 
int numberOfUpdatesDone
 
int jsOffsetNodeIn
 
int jsOffsetNodeOut
 

Friends

class ParametricData< Instance >
 
class Model
 
class Traits
 

Additional Inherited Members

- Public Attributes inherited from Xyce::Device::DeviceInstance
std::vector< int > & cols
 
std::vector< double > & vals
 
NumericalJacobiannumJacPtr
 
bool psLoaded
 
bool ssLoaded
 
bool rhsLoaded
 
bool origFlag
 
int numIntVars
 
int numExtVars
 
int numStateVars
 
int numStoreVars
 
int numLeadCurrentStoreVars
 
bool loadLeadCurrent
 
std::vector< int > devConMap
 
bool mergeRowColChecked
 
- Protected Member Functions inherited from Xyce::Device::DeviceInstance
void jacStampMap (std::vector< std::vector< int > > &stamp_parent, std::vector< int > &map_parent, std::vector< std::vector< int > > &map2_parent, std::vector< std::vector< int > > &stamp, std::vector< int > &map, std::vector< std::vector< int > > &map2, int from, int to, int original_size)
 
void jacStampMap_fixOrder (std::vector< std::vector< int > > &stamp_parent, std::vector< std::vector< int > > &map2_parent, std::vector< std::vector< int > > &stamp, std::vector< std::vector< int > > &map2)
 
void outputJacStamp (const std::vector< std::vector< int > > &jac)
 
void outputJacMaps (const std::vector< int > &jacMap, const std::vector< std::vector< int > > &jacMap2)
 
- Protected Attributes inherited from Xyce::Device::DeviceInstance
const ExternDataextData
 
std::list< index_pair > intGIDList
 
std::list< index_pair > extGIDList
 
std::list< index_pair > indexPairList
 
std::list< index_pair > staGIDList
 
std::vector< int > intLIDVec
 
std::vector< int > extLIDVec
 
std::vector< int > staLIDVec
 
std::vector< int > stoLIDVec
 
std::vector< int > devLIDs
 
std::vector< std::vector< int > > devJacLIDs
 
std::map< int, std::string > intNameMap
 
std::map< int, std::string > stateNameMap
 
std::map< int, std::string > storeNameMap
 
DeviceSupport devSupport
 

Detailed Description

Definition at line 96 of file N_DEV_NeuronPop1.h.

Constructor & Destructor Documentation

Xyce::Device::NeuronPop1::Instance::Instance ( const Configuration configuration,
const InstanceBlock IB,
Model Miter,
const FactoryBlock factory_block 
)

Definition at line 127 of file N_DEV_NeuronPop1.C.

Xyce::Device::NeuronPop1::Instance::~Instance ( )

Definition at line 270 of file N_DEV_NeuronPop1.C.

Xyce::Device::NeuronPop1::Instance::Instance ( const Instance )
private

Member Function Documentation

void Xyce::Device::NeuronPop1::Instance::auxDAECalculations ( )
bool Xyce::Device::NeuronPop1::Instance::getInstanceBreakPoints ( std::vector< N_UTL_BreakPoint > &  breakPointTimes)
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 579 of file N_DEV_NeuronPop1.C.

std::map< int, std::string > & Xyce::Device::NeuronPop1::Instance::getIntNameMap ( )
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 347 of file N_DEV_NeuronPop1.C.

Model& Xyce::Device::NeuronPop1::Instance::getModel ( )
inline

Definition at line 157 of file N_DEV_NeuronPop1.h.

void Xyce::Device::NeuronPop1::Instance::initializePopulation ( )
private

Definition at line 454 of file N_DEV_NeuronPop1.C.

const std::vector< std::vector< int > > & Xyce::Device::NeuronPop1::Instance::jacobianStamp ( ) const
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 420 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::loadDAEdFdx ( )
virtual

Implements Xyce::Device::DeviceInstance.

Definition at line 757 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::loadDAEdQdx ( )
virtual

Implements Xyce::Device::DeviceInstance.

Definition at line 738 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::loadDAEFVector ( )
virtual

Implements Xyce::Device::DeviceInstance.

Definition at line 716 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::loadDAEQVector ( )
virtual

Implements Xyce::Device::DeviceInstance.

Definition at line 696 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::loadDeviceMask ( )
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 404 of file N_DEV_NeuronPop1.C.

Instance& Xyce::Device::NeuronPop1::Instance::operator= ( const Instance )
private
bool Xyce::Device::NeuronPop1::Instance::outputPlotFiles ( )
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 779 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::plotfileFlag ( )
inlinevirtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 152 of file N_DEV_NeuronPop1.h.

bool Xyce::Device::NeuronPop1::Instance::processParams ( )
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 282 of file N_DEV_NeuronPop1.C.

void Xyce::Device::NeuronPop1::Instance::registerJacLIDs ( const std::vector< std::vector< int > > &  jacLIDVec)
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 433 of file N_DEV_NeuronPop1.C.

void Xyce::Device::NeuronPop1::Instance::registerLIDs ( const std::vector< int > &  intLIDVecRef,
const std::vector< int > &  extLIDVecRef 
)
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 315 of file N_DEV_NeuronPop1.C.

void Xyce::Device::NeuronPop1::Instance::registerStateLIDs ( const std::vector< int > &  staLIDVecRef)
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 375 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::setIC ( )
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 853 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::updateIntermediateVars ( )
virtual

Implements Xyce::Device::DeviceInstance.

Definition at line 597 of file N_DEV_NeuronPop1.C.

void Xyce::Device::NeuronPop1::Instance::updatePopulation ( )
private

Definition at line 535 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::updatePrimaryState ( )
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 665 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::updateSecondaryState ( )
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 681 of file N_DEV_NeuronPop1.C.

bool Xyce::Device::NeuronPop1::Instance::updateTemperature ( const double &  temp_tmp)
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 301 of file N_DEV_NeuronPop1.C.

void Xyce::Device::NeuronPop1::Instance::varTypes ( std::vector< char > &  varTypeVec)
virtual

Reimplemented from Xyce::Device::DeviceInstance.

Definition at line 868 of file N_DEV_NeuronPop1.C.

Friends And Related Function Documentation

friend class Model
friend

Definition at line 99 of file N_DEV_NeuronPop1.h.

friend class ParametricData< Instance >
friend

Definition at line 98 of file N_DEV_NeuronPop1.h.

friend class Traits
friend

Definition at line 100 of file N_DEV_NeuronPop1.h.

Member Data Documentation

std::vector<std::string> Xyce::Device::NeuronPop1::Instance::connectionTargetPopulation
private

Definition at line 187 of file N_DEV_NeuronPop1.h.

bool Xyce::Device::NeuronPop1::Instance::connectionTargetPopulationGiven
private

Definition at line 188 of file N_DEV_NeuronPop1.h.

std::vector< std::vector<int> > Xyce::Device::NeuronPop1::Instance::jacStamp
private

Definition at line 170 of file N_DEV_NeuronPop1.h.

int Xyce::Device::NeuronPop1::Instance::jsOffsetNodeIn
private

Definition at line 200 of file N_DEV_NeuronPop1.h.

int Xyce::Device::NeuronPop1::Instance::jsOffsetNodeOut
private

Definition at line 201 of file N_DEV_NeuronPop1.h.

double Xyce::Device::NeuronPop1::Instance::lastNeurogenesisUpdateTime
private

Definition at line 182 of file N_DEV_NeuronPop1.h.

double Xyce::Device::NeuronPop1::Instance::lastPopulationUpdateTime
private

Definition at line 181 of file N_DEV_NeuronPop1.h.

std::vector<int> Xyce::Device::NeuronPop1::Instance::liNeuronPopState
private

Definition at line 177 of file N_DEV_NeuronPop1.h.

int Xyce::Device::NeuronPop1::Instance::liNodeIn
private

Definition at line 173 of file N_DEV_NeuronPop1.h.

int Xyce::Device::NeuronPop1::Instance::liNodeOut
private

Definition at line 174 of file N_DEV_NeuronPop1.h.

Model& Xyce::Device::NeuronPop1::Instance::model_
private

Definition at line 168 of file N_DEV_NeuronPop1.h.

int Xyce::Device::NeuronPop1::Instance::neuronPopSize
private

Definition at line 183 of file N_DEV_NeuronPop1.h.

bool Xyce::Device::NeuronPop1::Instance::newStateToOutput
private

Definition at line 194 of file N_DEV_NeuronPop1.h.

int Xyce::Device::NeuronPop1::Instance::numberOfUpdatesDone
private

Definition at line 197 of file N_DEV_NeuronPop1.h.

Teuchos::RefCountPtr< std::ofstream > Xyce::Device::NeuronPop1::Instance::outputFileStreamPtr
private

Definition at line 192 of file N_DEV_NeuronPop1.h.

bool Xyce::Device::NeuronPop1::Instance::outputPopulationVarsFlag
private

Definition at line 193 of file N_DEV_NeuronPop1.h.

bool Xyce::Device::NeuronPop1::Instance::populationInitialized
private

Definition at line 180 of file N_DEV_NeuronPop1.h.


The documentation for this class was generated from the following files: