46 #include <Xyce_config.h>
51 #include <N_UTL_Misc.h>
62 #include <N_ERH_ErrorMgr.h>
66 #include <N_LAS_Vector.h>
67 #include <N_LAS_Matrix.h>
184 :
DeviceInstance(IB, configuration.getInstanceParameters(), factory_block),
344 bool bsuccess =
true;
357 const std::vector<int> & extLIDVecRef)
362 #ifdef Xyce_DEBUG_DEVICE
365 Xyce::dout() << std::endl << section_divider << std::endl;
366 Xyce::dout() <<
" Instance::registerLIDs" << std::endl;
367 Xyce::dout() <<
" name = " <<
getName() << std::endl;
387 #ifdef Xyce_DEBUG_DEVICE
390 Xyce::dout() <<
" li_Pos = " <<
li_Pos << std::endl
391 <<
" li_Neg = " <<
li_Neg << std::endl
392 <<
" li_nPro = " <<
li_nPro << std::endl
393 <<
" li_mPro = " <<
li_mPro << std::endl
394 <<
" li_hPro = " <<
li_hPro << std::endl
395 <<
" li_aPro = " <<
li_aPro << std::endl
396 <<
" li_bPro = " <<
li_bPro << std::endl
397 <<
" li_M_Pro = " <<
li_M_Pro << std::endl
398 <<
" li_H_Pro = " <<
li_H_Pro << std::endl
399 <<
" li_cPro = " <<
li_cPro << std::endl
400 <<
" li_CaPro = " <<
li_CaPro << std::endl;
404 #ifdef Xyce_DEBUG_DEVICE
407 Xyce::dout() << section_divider << std::endl;
426 std::ostringstream segNumber;
428 tmpstr =
getName() +
"_" +
"N";
432 tmpstr =
getName() +
"_" +
"M";
436 tmpstr =
getName() +
"_" +
"H";
440 tmpstr =
getName() +
"_" +
"A";
444 tmpstr =
getName() +
"_" +
"B";
448 tmpstr =
getName() +
"_" +
"M_";
452 tmpstr =
getName() +
"_" +
"H_";
456 tmpstr =
getName() +
"_" +
"C";
460 tmpstr =
getName() +
"_" +
"Ca";
503 bool returnVal=
false;
608 bool bsuccess =
true;
616 double v1Now = (*solVectorPtr)[
li_Pos];
617 double v2Now = (*solVectorPtr)[
li_Neg];
618 double nNow = (*solVectorPtr)[
li_nPro];
619 double mNow = (*solVectorPtr)[
li_mPro];
620 double hNow = (*solVectorPtr)[
li_hPro];
621 double aNow = (*solVectorPtr)[
li_aPro];
622 double bNow = (*solVectorPtr)[
li_bPro];
623 double M_Now = (*solVectorPtr)[
li_M_Pro];
624 double H_Now = (*solVectorPtr)[
li_H_Pro];
625 double cNow = (*solVectorPtr)[
li_cPro];
626 double CaNow = (*solVectorPtr)[
li_CaPro];
632 Sacado::Fad::SFad<double,10> v1Var( 10, 0, v1Now );
633 Sacado::Fad::SFad<double,10> v2Var( 10, 1, v2Now );
634 Sacado::Fad::SFad<double,10> nVar( 10, 2, nNow );
635 Sacado::Fad::SFad<double,10> mVar( 10, 3, mNow );
636 Sacado::Fad::SFad<double,10> hVar( 10, 4, hNow );
637 Sacado::Fad::SFad<double,10> aVar( 10, 5, aNow );
638 Sacado::Fad::SFad<double,10> bVar( 10, 6, bNow );
639 Sacado::Fad::SFad<double,10> M_Var( 10, 7, M_Now );
640 Sacado::Fad::SFad<double,10> H_Var( 10, 8, H_Now );
641 Sacado::Fad::SFad<double,10> cVar( 10, 9, cNow );
644 Sacado::Fad::SFad<double,10> gMemVar(
model_.
gMem );
645 Sacado::Fad::SFad<double,10> vRestVar(
model_.
vRest );
646 Sacado::Fad::SFad<double,10> gKVar(
model_.
gK );
647 Sacado::Fad::SFad<double,10> eKVar(
model_.
eK );
648 Sacado::Fad::SFad<double,10> gNaVar(
model_.
gNa );
649 Sacado::Fad::SFad<double,10> eNaVar(
model_.
eNa );
650 Sacado::Fad::SFad<double,10> gAVar(
model_.
gA );
651 Sacado::Fad::SFad<double,10> eAVar(
model_.
eA );
652 Sacado::Fad::SFad<double,10> gCaVar(
model_.
gCa );
653 Sacado::Fad::SFad<double,10> eCaVar(
model_.
eCa );
654 Sacado::Fad::SFad<double,10> gKCaVar(
model_.
gKCa );
655 Sacado::Fad::SFad<double,10> CaInitVar(
model_.
CaInit );
657 Sacado::Fad::SFad<double,10> CaTauVar(
model_.
CaTau );
660 Sacado::Fad::SFad<double,10> resultFad;
661 resultFad =
Neuron::kcl1EquF( v1Var, v2Var, nVar, mVar, hVar, aVar, bVar, M_Var, H_Var, cVar, gMemVar, vRestVar, gKVar, eKVar, gNaVar, eNaVar, gAVar, eAVar, gCaVar, eCaVar, gKCaVar);
675 resultFad =
Neuron::kcl2EquF( v1Var, v2Var, nVar, mVar, hVar, aVar, bVar, M_Var, H_Var, cVar, gMemVar, vRestVar, gKVar, eKVar, gNaVar, eNaVar, gAVar, eAVar, gCaVar, eCaVar, gKCaVar);
690 Sacado::Fad::SFad<double,2> v1Var( 2, 0, v1Now );
691 Sacado::Fad::SFad<double,2> v2Var( 2, 1, v2Now );
694 Sacado::Fad::SFad<double,2> cMemVar(
model_.
cMem );
696 Sacado::Fad::SFad<double,2> resultFad;
710 Sacado::Fad::SFad<double,2> v1Var( 2, 0, v1Now );
711 Sacado::Fad::SFad<double,2> nVar( 2, 1, nNow );
713 Sacado::Fad::SFad<double,2> vRestVar(
model_.
vRest );
715 Sacado::Fad::SFad<double,2> resultFad =
Neuron::nEquF( v1Var, nVar);
722 Sacado::Fad::SFad<double,1> nVar( 1, 0, nNow );
724 Sacado::Fad::SFad<double,1> resultFad =
Neuron::nEquQ( nVar );
731 Sacado::Fad::SFad<double,2> v1Var( 2, 0, v1Now );
732 Sacado::Fad::SFad<double,2> mVar( 2, 1, mNow );
734 Sacado::Fad::SFad<double,2> vRestVar(
model_.
vRest );
736 Sacado::Fad::SFad<double,2> resultFad =
Neuron::mEquF( v1Var, mVar );
742 Sacado::Fad::SFad<double,1> mVar( 1, 0, mNow );
744 Sacado::Fad::SFad<double,1> resultFad =
Neuron::mEquQ( mVar );
751 Sacado::Fad::SFad<double,2> v1Var( 2, 0, v1Now );
752 Sacado::Fad::SFad<double,2> hVar( 2, 1, hNow );
754 Sacado::Fad::SFad<double,2> vRestVar(
model_.
vRest );
756 Sacado::Fad::SFad<double,2> resultFad =
Neuron::hEquF( v1Var, hVar );
762 Sacado::Fad::SFad<double,1> hVar( 1, 0, hNow );
764 Sacado::Fad::SFad<double,1> resultFad =
Neuron::hEquQ( hVar );
771 Sacado::Fad::SFad<double,2> v1Var( 2, 0, v1Now );
772 Sacado::Fad::SFad<double,2> aVar( 2, 1, aNow );
774 Sacado::Fad::SFad<double,2> vRestVar(
model_.
vRest );
776 Sacado::Fad::SFad<double,2> resultFad =
Neuron::aEquF( v1Var, aVar, vRestVar );
782 Sacado::Fad::SFad<double,1> aVar( 1, 0, aNow );
784 Sacado::Fad::SFad<double,1> resultFad =
Neuron::aEquQ( aVar );
791 Sacado::Fad::SFad<double,2> v1Var( 2, 0, v1Now );
792 Sacado::Fad::SFad<double,2> bVar( 2, 1, bNow );
794 Sacado::Fad::SFad<double,2> vRestVar(
model_.
vRest );
796 Sacado::Fad::SFad<double,2> resultFad =
Neuron::bEquF( v1Var, bVar, vRestVar );
802 Sacado::Fad::SFad<double,1> bVar( 1, 0, bNow );
804 Sacado::Fad::SFad<double,1> resultFad =
Neuron::aEquQ( bVar );
811 Sacado::Fad::SFad<double,2> v1Var( 2, 0, v1Now );
812 Sacado::Fad::SFad<double,2> M_Var( 2, 1, M_Now );
814 Sacado::Fad::SFad<double,2> vRestVar(
model_.
vRest );
816 Sacado::Fad::SFad<double,2> resultFad =
Neuron::M_EquF( v1Var, M_Var, vRestVar );
822 Sacado::Fad::SFad<double,1> M_Var( 1, 0, M_Now );
824 Sacado::Fad::SFad<double,1> resultFad =
Neuron::aEquQ( M_Var );
831 Sacado::Fad::SFad<double,2> v1Var( 2, 0, v1Now );
832 Sacado::Fad::SFad<double,2> H_Var( 2, 1, H_Now );
834 Sacado::Fad::SFad<double,2> vRestVar(
model_.
vRest );
836 Sacado::Fad::SFad<double,2> resultFad =
Neuron::H_EquF( v1Var, H_Var, vRestVar );
842 Sacado::Fad::SFad<double,1> H_Var( 1, 0, H_Now );
851 Sacado::Fad::SFad<double,3> v1Var( 3, 0, v1Now );
852 Sacado::Fad::SFad<double,3> cVar( 3, 1, cNow );
853 Sacado::Fad::SFad<double,3> CaVar( 3, 2, CaNow );
855 Sacado::Fad::SFad<double,3> vRestVar(
model_.
vRest );
857 Sacado::Fad::SFad<double,3> resultFad =
Neuron::C_EquF( v1Var, cVar, CaVar, vRestVar );
864 Sacado::Fad::SFad<double,1> cVar( 1, 0, cNow );
873 Sacado::Fad::SFad<double,5> v1Var( 5, 0, v1Now );
874 Sacado::Fad::SFad<double,5> v2Var( 5, 1, v2Now );
875 Sacado::Fad::SFad<double,5> M_Var( 5, 2, M_Now );
876 Sacado::Fad::SFad<double,5> H_Var( 5, 3, H_Now );
877 Sacado::Fad::SFad<double,5> CaVar( 5, 4, CaNow );
880 Sacado::Fad::SFad<double,5> gCaVar(
model_.
gCa );
881 Sacado::Fad::SFad<double,5> eCaVar(
model_.
gCa );
883 Sacado::Fad::SFad<double,5> CaTauVar(
model_.
CaTau );
885 Sacado::Fad::SFad<double,5> resultFad =
Neuron::Ca_EquF( v1Var, v2Var, M_Var, H_Var, CaVar, gCaVar, eCaVar, CaGammaVar, CaTauVar );
894 Sacado::Fad::SFad<double,1> CaVar( 1, 0, CaNow );
907 #ifdef Xyce_DEBUG_DEVICE
910 Xyce::dout() <<
"Instance::updateIntermediateVars()" << std::endl
911 <<
"v1 = " << v1Now << std::endl
912 <<
"v2 = " << v2Now << std::endl
913 <<
"nNow = " << nNow << std::endl
914 <<
"mNow = " << mNow << std::endl
915 <<
"hNow = " << hNow << std::endl
916 <<
"aNow = " << aNow << std::endl
917 <<
"bNow = " << bNow << std::endl
918 <<
"M_Now = " << M_Now << std::endl
919 <<
"H_Now = " << H_Now << std::endl
920 <<
"cNow = " << cNow << std::endl
921 <<
"CaNow = " << CaNow << std::endl
925 <<
"dkcl1F_dn = " <<
dkcl1F_dn << std::endl
926 <<
"dkcl1F_dm = " <<
dkcl1F_dm << std::endl
927 <<
"dkcl1F_dh = " <<
dkcl1F_dh << std::endl
931 <<
"dkcl2F_dn = " <<
dkcl2F_dn << std::endl
932 <<
"dkcl2F_dm = " <<
dkcl2F_dm << std::endl
933 <<
"dkcl2F_dh = " <<
dkcl2F_dh << std::endl
935 <<
"alphaN = " << alphaN<double>( v1Now ) << std::endl
936 <<
"betaN = " << betaN<double>( v1Now ) << std::endl
939 <<
"dnF_dV1 = " <<
dnF_dV1 << std::endl
940 <<
"dnF_dn = " <<
dnF_dn << std::endl
942 <<
"dnQ_dn = " <<
dnQ_dn << std::endl
944 <<
"alphaM = " << alphaM<double>( v1Now ) << std::endl
945 <<
"betaM = " << betaM<double>( v1Now ) << std::endl
948 <<
"dmF_dV1 = " <<
dmF_dV1 << std::endl
949 <<
"dmF_dm = " <<
dmF_dm << std::endl
951 <<
"dmQ_dm = " <<
dmQ_dm << std::endl
953 <<
"alphaH = " << alphaH<double>( v1Now ) << std::endl
954 <<
"betaH = " << betaH<double>( v1Now ) << std::endl
957 <<
"dhF_dV1 = " <<
dhF_dV1 << std::endl
958 <<
"dhF_dh = " <<
dhF_dh << std::endl
960 <<
"dhQ_dh = " <<
dhQ_dh << std::endl
963 <<
"aInf = " << aInf<double>( v1Now ) << std::endl
964 <<
"aTau = " << aTau<double>( v1Now ) << std::endl
967 <<
"daF_dV1 = " <<
daF_dV1 << std::endl
968 <<
"daF_da = " <<
daF_da << std::endl
970 <<
"daQ_da = " <<
daQ_da << std::endl
973 <<
"bInf = " << bInf<double>( v1Now ) << std::endl
974 <<
"bTau = " << bTau<double>( v1Now ) << std::endl
977 <<
"dbF_dV1 = " <<
dbF_dV1 << std::endl
978 <<
"dbF_db = " <<
dbF_db << std::endl
980 <<
"dbQ_db = " <<
dbQ_db << std::endl
983 <<
"M_Inf = " << M_Inf<double>( v1Now ) << std::endl
984 <<
"M_Tau = " << M_Tau<double>( v1Now ) << std::endl
987 <<
"dMF_dV1 = " <<
dMF_dV1 << std::endl
988 <<
"dMF_dM = " <<
dMF_dM << std::endl
990 <<
"dMQ_dM = " <<
dMQ_dM << std::endl
993 <<
"H_Inf = " << H_Inf<double>( v1Now ) << std::endl
994 <<
"H_Tau = " << H_Tau<double>( v1Now ) << std::endl
997 <<
"dHF_dV1 = " <<
dHF_dV1 << std::endl
998 <<
"dHF_dH = " <<
dHF_dH << std::endl
1000 <<
"dHQ_dH = " <<
dHQ_dH << std::endl
1002 <<
"cEquFvalue = " <<
cEquFvalue << std::endl
1003 <<
"dcF_dV1 = " <<
dcF_dV1 << std::endl
1004 <<
"dcF_dc = " <<
dcF_dc << std::endl
1005 <<
"cEquQvalue = " <<
cEquQvalue << std::endl
1006 <<
"dcQ_dc = " <<
dcQ_dc << std::endl
1009 <<
"dCaF_dV1 = " <<
dCaF_dV1 << std::endl
1010 <<
"dCaF_dV2 = " <<
dCaF_dV2 << std::endl
1011 <<
"dCaF_dM = " <<
dCaF_dM << std::endl
1012 <<
"dCaF_dH = " <<
dCaF_dH << std::endl
1013 <<
"dCaF_dCa = " <<
dCaF_dCa << std::endl
1015 <<
"dCaQ_dCa = " <<
dCaQ_dCa << std::endl
1034 bool bsuccess =
true;
1057 bool bsuccess =
true;
1079 bool bsuccess =
true;
1144 bool bsuccess =
true;
1183 bool bsuccess =
true;
1253 bool bsuccess =
true;
1297 std::vector<Instance*>::iterator iter;
1301 for (iter=first; iter!=last; ++iter)
1303 (*iter)->processParams();
1321 :
DeviceModel(MB, configuration.getModelParameters(), factory_block)
1351 std::vector<Instance*>::iterator iter;
1355 for (iter=first; iter!=last; ++iter)
1374 std::vector<Instance*>::const_iterator iter;
1382 os <<
"Number of Neuron instances: " << isize << std::endl;
1383 os <<
" name=\t\tmodelName\tParameters" << std::endl;
1384 for (i=0, iter=first; iter!=last; ++iter, ++i)
1386 os <<
" " << i <<
": " << (*iter)->getName() <<
"\t";
1411 for (std::vector<Instance *>::const_iterator it = instanceContainer.begin(); it != instanceContainer.end(); ++it)
1425 .registerDevice(
"neuron", 5)
1426 .registerModelType(
"neuron", 5);